Showing : R edgeR DE • reset
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nested modeling for unequal groups with edgeR
edger r edger de
updated 8.5 years ago by ★ 7.9k • written 8.5 years ago by ▴ 20
2
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6
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1.6k
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edgeR - making 12 contrast but only get 5 contrasts as a result
r edger de contrast design and contrast matrix
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 300
2
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5
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2.0k
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ANOVA in EdgeR
edger main and interaction effects edger r edger de
9.0 years ago julie.green • 0
5
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3
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3.5k
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Understanding edgeR coefficients and design
edger r edger de rna-seq
updated 9.4 years ago by 51k • written 9.4 years ago by ▴ 30
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2
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4.6k
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EdgeR with normalized data
r edger de
updated 9.7 years ago by ★ 13k • written 9.7 years ago by • 0
6
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3
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8.8k
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What is difference between classic and GLM edgeR
r edger de
9.8 years ago adrianna-christina ▴ 10
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8
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3.4k
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how to design contrast formula with 2 factors multiple levels in edgeR?
R edgeR DE
10.0 years ago feicaiyi • 0
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Comment: Deseq2 res Function by James W. MacDonald 67k
In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…
Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k
You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …
Comment: Identifying potentially associated gene set to drug response using GSVA by Robert Castelo ★ 3.4k
So, if I understand correctly, you derived GSVA scores from gene sets corresponding somehow to drugs in your RNA-seq data. Since GSVA score…
Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
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Comment: Is it recommended to analyze different tissues together when using edgeR
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
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